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Tag words: bacteria, archaea, procaryote, prokaryote, procaryotic, prokaryotic, microbiology, microbe, Euryarchaeota, Crenarchaeota, Korarchaeota, methanogen, Methanobacterium, Methanococcus, thermoacidophile, Sulfolobus, hyperthermophile, extreme halophile, Halococcus, Halobacterium, extremophile, Bergey's Manual, The Prokaryotes, Domains of Life, phylogenetic tree, Gram negative bacteria, Gram positive bacteria, green bacteria, Chlorobium, Chloroflexus, purple bacteria, Thiopedia, Chromatium, Rhodobacter, Rhodospirillum, Heliobacterium, Chloracidobacterium, cyanobacteria, Nostoc, Oscillatoria, Anabaena, Synechococcus, spirochete, Borrelia, Treponema, Leptospira, spirilla, vibrios, pyogenic cocci, myxobacteria, lithotrophic bacteria, nitrogen fixing bacteria, endospore forming bacteria, enteric bacteria, aerobic bacteria, anaerobic bacteria, proteobacteria, E. coli, Salmonella, Shigella, Erwinia, Yersinia, Pseudomonas, pseudomonad, Vibrio, Rhizobium, Rickettsia, Bordetella, Neisseria, Haemophilus, Legionella, Campylobacter, Helicobacter, Firmicutes, Staphylococcus, Streptococcus, Bacillus, Clostridium, Listeria, lactic acid bacteria, Enterococcus, Lactococcus, Lactobacillus, Actinomycete, Streptomyces, Mycobacterium, Corynebacterium, Rickettsia, Chlamydia, Xanthomonas, Burkholderia, Ralstonia.









Kenneth Todar currently teaches Microbiology 100 at the University of Wisconsin-Madison.  His main teaching interest include general microbiology, bacterial diversity, microbial ecology and pathogenic bacteriology.

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Important Groups of Procaryotes (page 2)

(This chapter has 10 pages)

© Kenneth Todar, PhD

BACTERIA

Current phylogenetic analysis of the Bacteria has demonstrated the existence of more than 20 distinct groups with taxonomic phylum status (Phylum is the highest taxon in a Domain). A phylogenetic tree that displays 13 groups is given shown in Figure 5. Most groups listed consist of a distinct phylum; some are now subdivided into more than one phylum. Many groups consist of members that are phenotypically and physiologically unrelated. Furthermore, in some phylogenetic groups (e.g. Proteobacteria and Gram-positives) there is considerable phylogenetic diversity, unappreciated in the big Tree of Life. The current edition of Bergey's Manual of Systematic Bacteriology recognizes 24 distinct phyla of Bacteria, but there remains considerable diversity in phenotype among members of some phyla.


Recognized Phyla of the Domain Bacteria (for representative genera see the Appendix at the end of this page).
Acidobacteria
Actinobacteria
Aquificae
Bacteroidetes
Chlamydiae
Chlorobi
Chloroflexi
Chrysiogenetes
Cyanobacteria
Deferribacteres
Deinococcus-Thermus
Dictyoglomi
Fibrobacteres
Firmicutes
Fusobacteria
Gemmatimonadetes
Nitrospirae
Planctomycetes
Proteobacteria
Spirochaetes
Thermodesulfobacteria
Thermomicrobia
Thermotogae
Verrucomicrobia


Since we discuss the major groups of bacteria herein based on morphology, physiology, or ecology, it may be interesting to examine the phylogenetic relatedness of group members. Sometimes, members of a phylum are quite distinct (e.g. spirochetes); other times, our organization involves a confluence of phyla (e.g. phototrophs, lithotrophs, pyogenic cocci). This makes for reflection on how related and unrelated organisms converge on the same strategy to adapt to specific environments.

Figure 5. Phylogenetic tree of Bacteria

Photosynthetic purple and green bacteria These bacteria conduct anoxygenic photosynthesis, also called bacterial photosynthesis. Bacterial photosynthesis differs from plant-type (oxygenic) photosynthesis in several ways. Bacterial photosynthesis does not produce O2; in fact, it only occurs under anaerobic conditions. Bacterial photosynthesis utilizes a type of chlorophyll other than chlorophyll a, and only one photosystem, photosystem I. The electron donor for bacterial photosynthesis is never H2O but may be H2, H2S or So, or certain organic compounds. The light-absorbing pigments of the purple and green bacteria consist of bacterial chlorophylls and carotenoids. Phycobilins, characteristic of the cyanobacteria, are not found. Many purple and green sulfur bacteria store elemental sulfur as a reserve material that can be further oxidized to SO4 as a photosynthetic electron donor.

The purple and green bacteria may use H2S during photosynthesis in the same manner that cyanobacteria or algae or plants use H2O as an electron donor for autotrophic CO2 fixation (the "dark reaction" of photosynthesis). Or they may utilize organic compounds as electron donors for photosynthesis. For example, Rhodobacter can use light as an energy source while oxidizing succinate or butyrate in order to obtain electrons for CO2 fixation.

The bacterium that became an endosymbiont of eucaryotes and evolved into mitochondria is thought to be a relative of the purple nonsulfur bacteria. This conclusion is based on similar metabolic features of mitochondria and purple nonsulfur bacteria and on comparisons of the base sequences in their 16S rRNAs.

Figure 6. Photomicrographs (phase contrast and and ordinary illumination) of various photosynthetic bacteria (Norbert Pfennig). Magnifications are about 1400X. The purple and green bacteria exhibit a full range of procaryotic morphologies, as these photomicrographs illustrate. Diversity among their phylogenetic relationships is also noted.


A. Purple sulfur bacteria (L to R): Chromatium vinosum, Thiospirillum jenense, Thiopedia rosea. The purple sulfur bacteria are classified among the Gamma Proteobacteria, a class that also includes Pseudomonas and E. coli.


B. Purple nonsulfur bacteria (L to R): Rhodospirillum rubrum, Rhodobacter sphaeroides, Rhodomicrobium vannielii. The purple nonsulfur bacteria are in the Alpha Proteobacteria, which also includes Rhizobium, Agrobacterium and the Rickettsias. The latter bacteria represent a direct lineage to mitochondria.


C. Green sulfur bacteria (L to R): Chlorobium limicola, Prosthecochloris aestuarii, Pelodictyon clathratiforme. The Green sulfur bacteria represent a distinct phylogenetic lineage and cluster in their own phylum represented by Chlorobium in Figure 5.


Figure 7. Green nonsulfur bacterium, Chloroflexus (T.D. Brock). Chloroflexus also represents a phylogenetically distinct group of green bacteria. Chloroflexus is a thermophilic, filamentous gliding bacterium.


Figure 8. Photosynthetic procaryotes growing in a hot spring run-off channel (T.D. Brock). The white area of the channel is too hot for photosynthetic life, but as the water cools along a gradient, the colored phototrophic bacteria colonize and ultimately construct the colored microbial mats composed of a consortium of photosynthetic microorganisms.

Heliobacteria The heliobacteria are a unique group of anoxygenic photosynthetic bacteria. They have a typical bacterial PSI type reaction center, but the primary pigment involved is bacteriochlorophyll g, which is unique to the group and has a unique absorption spectrum. This gives the heliobacteria their own environmental niche. Photosynthesis takes place at the cell membrane, which does not form folds or compartments as it does in purple phototrophic bacteria.

Interestingly, phylogenetic analysis place the heliobacteria among the Firmicutes (Gram-positive bacteria), but they do not stain Gram-positive. They have no outer membrane and like certain other firmicutes (clostridia) they form heat resistant endospores. Also, are the only firmicutes known to conduct photosynthesis.

Heliobacteria are photoheterotrophic, requiring organic carbon sources, and they are exclusively anaerobic. heliobacteria have been found in soils and are apparently widespread in the waterlogged soils of paddy fields. They fix nitrogen and are probably important in the fertility of paddy fields.

Chloracidobacterium thermophilum Prospecting for genetic data in the microbial mats of Yellowstone Park and looking for evidence of a green sulfur bacteria, microbiologist David Ward of Montana State University found a "wildly different kind of phototrophic bacterium" in the 66oC water. Evidence for the organism was found using the techniques of metagenomics, and subsequently by generating an enriched monoculture. The organism described and grown was named Chloracidobacterium thermophilum. By demonstrating that the monoculture was tolerant to O2, but could not be maintained in darkness, it was concluded that the organism was a new type of photosynthetic microbe. Despite its  affiliation with the bacterial phylum Acidobacterium, which consists of hyperthermophilic acidophiles, Chloracidobacterium thermophilum thrives in alkaline environments.

In addition to being able perform photosynthesis in the presence of oxygen, Chloroacidobacterium thermophilum is also the only oxygen-tolerant bacterium that constructs chlorosomes, providing light-harversting molecular antennae that allow the organisms to live at vanishingly low light intensities.




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